General Information of This Payload
Payload ID
PAY0VFZVV
Name
BTK PROTAC 1
Synonyms
BTK PROTAC 1
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Target Tyrosine-protein kinase BTK (BTK)
Formula
C52H54F2N8O6
Isosmiles
CC(C)(O)C1=CC=C(C(NC2=C(C)C(C3=NC=NC4=C3C=C(N4)C5=CC=C(CCN6CCC(CC6)(CC7)CCN7C(C8=CC(N(CCC9=O)C(N9)=O)=C(OC)C=C8)=O)C=C5)=CC(F)=C2)=O)C(F)=C1
PubChem CID
139534374
InChI
InChI=1S/C52H54F2N8O6/c1-31-38(27-36(53)28-41(31)58-48(64)37-11-10-35(26-40(37)54)51(2,3)67)46-39-29-42(57-47(39)56-30-55-46)33-7-5-32(6-8-33)13-19-60-21-15-52(16-22-60)17-23-61(24-18-52)49(65)34-9-12-44(68-4)43(25-34)62-20-14-45(63)59-50(62)66/h5-12,25-30,67H,13-24H2,1-4H3,(H,58,64)(H,55,56,57)(H,59,63,66)
InChIKey
XVFYIPZRPLFGKW-UHFFFAOYSA-N
Pharmaceutical Properties
Molecule Weight
925.05
Polar area
173.09
Complexity
2854.542493
xlogp Value
8.37402
Heavy Count
68
Rot Bonds
11
Hbond acc
9
Hbond Donor
4
The activity data of This Payload
Standard Type Value Units Cell line Disease Model Cell line ID Reference
Half Maximal Degradation Concentration (DC50) 0.022 nM
TMD8 cells (wt)
Diffuse large B-cell lymphoma, Diffuse large B-cell lymphoma activated B-cell type
CVCL_A442 
[1]
Half Maximal Degradation Concentration (DC50) 0.022 nM
TMD8 cells (wt)
Diffuse large B-cell lymphoma, Diffuse large B-cell lymphoma activated B-cell type
CVCL_A442 
[1]
Each Antibody-drug Conjugate Related to This Payload
Full Information of The Activity Data of The ADC(s) Related to This Payload
CD79b-3 [Investigative]
Revealed Based on the Cell Line Data
Click To Hide/Show 1 Activity Data Related to This Level
Experiment 1 Reporting the Activity Date of This ADC [1]
Efficacy Data Half Maximal Degradation Concentration (DC50)
0.045 nM
Method Description
The TMD8 wt cell line was cultured in media that is optimal for their growth at 5% CO 2, 37°C in a tissue culture incubator. Prior to seeding for the growth inhibition assay, the cells were split at least 2 days before the assay to ensure optimal growth density. On the day of seeding, suspension cells were harvested. Cell viability and cell density were determined using a cell counter (Vi-Cell XR Cell Viability Analyzer, Beckman Coulter). Cells with higher than 85% viability were seeded in white clear bottom 96-well TC treated plates (Corning cat. #3903). Cells were seeded at a density of 75,000 cells per well in 70 uL of standard growth media. Plates were incubated at 5% CO 2, 37°C overnight in a tissue culture incubator. On the day of dosing, all ADCs and low molecular weight payloads were prepared at 8X in standard growth media. The prepared treatments were added to the cells, resulting in final concentrations of 9.92e-6 - 100 nM and a final volume of 80 uL per well. Each drug concentration was tested in duplicates. Plates were incubated at 5% CO 2, 37°C for 48 hours in a tissue culture incubator. After 48 hours, cells were lysed with 80 uL of freshly prepared lysis buffer (10X Millipore RIPA Lysis Buffer + 0.5M EDTA + 1x Roche cOmpleteTM Protease Inhibitor Cocktail EDTA-free tablet, diluted in ddH 2O to 2X). Cells were resuspended and incubated on ice for 10 minutes. Lysates were stored until further use at -80°C. Prior to running the assay, MULTI-ARRAY 96 Plate Pack, SECTOR Plates (MSD, L15XA-3) were coated with 50 uL/well of a BTK (D3H5) Rabbit mAb (Cell Signaling Technology, 8547BF) at 1 ug/mL diluted in PBS overnight at 4°C. The next day, MSD plates were washed 3 times with 300 uL/well of PBS + 0.05% Tween. Plates were then blocked with 150 uL/well of PBS + 5% BSA buffer, shaking at 450 rpm for 1 hour at room temperature. Plates were then washed 3 times with 300 uL/well of PBS + 0.05% Tween. Each lysate sample was added to the MSD plates at 25 uL/well, shaking at 450 rpm for 2 hours at room temperature. Plates were then washed 3 times with 300 uL/well of PBS + 0.05% Tween. A Sulfo-tag purified mouse anti-human BTK antibody (BD, clone 53, 624084) was diluted to 0.5 ug/mL and 25 uL was added to each well. Plates were shaken at 450 rpm for 1 hour at room temperature. Plates were then washed 3 times with 300 uL/well of PBS + 0.05% Tween. MSD Read Buffer T (4x) (MSD, R92TC-1) was diluted to 2X with ddH 2O and 150 uL was added to each well. Plates were immediately read on an MSD Sector 600 Imager. To evaluate the effect of the drug treatments, signal levels from wells containing untreated cells (100% viability) were used to normalize treated samples. A variable slope model was applied to fit a nonlinear regression curve to the data in GraphPad PRISM version 10 software. GI50 and Amax values were extrapolated from the resultant curves.

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In Vitro Model Diffuse large B-cell lymphoma, Diffuse large B-cell lymphoma activated B-cell type TMD8 cells (wt) CVCL_A442
CD79b-4 [Investigative]
Revealed Based on the Cell Line Data
Click To Hide/Show 1 Activity Data Related to This Level
Experiment 1 Reporting the Activity Date of This ADC [1]
Efficacy Data Half Maximal Degradation Concentration (DC50)
0.048 nM
Method Description
The TMD8 wt cell line was cultured in media that is optimal for their growth at 5% CO 2, 37°C in a tissue culture incubator. Prior to seeding for the growth inhibition assay, the cells were split at least 2 days before the assay to ensure optimal growth density. On the day of seeding, suspension cells were harvested. Cell viability and cell density were determined using a cell counter (Vi-Cell XR Cell Viability Analyzer, Beckman Coulter). Cells with higher than 85% viability were seeded in white clear bottom 96-well TC treated plates (Corning cat. #3903). Cells were seeded at a density of 75,000 cells per well in 70 uL of standard growth media. Plates were incubated at 5% CO 2, 37°C overnight in a tissue culture incubator. On the day of dosing, all ADCs and low molecular weight payloads were prepared at 8X in standard growth media. The prepared treatments were added to the cells, resulting in final concentrations of 9.92e-6 - 100 nM and a final volume of 80 uL per well. Each drug concentration was tested in duplicates. Plates were incubated at 5% CO 2, 37°C for 48 hours in a tissue culture incubator. After 48 hours, cells were lysed with 80 uL of freshly prepared lysis buffer (10X Millipore RIPA Lysis Buffer + 0.5M EDTA + 1x Roche cOmpleteTM Protease Inhibitor Cocktail EDTA-free tablet, diluted in ddH 2O to 2X). Cells were resuspended and incubated on ice for 10 minutes. Lysates were stored until further use at -80°C. Prior to running the assay, MULTI-ARRAY 96 Plate Pack, SECTOR Plates (MSD, L15XA-3) were coated with 50 uL/well of a BTK (D3H5) Rabbit mAb (Cell Signaling Technology, 8547BF) at 1 ug/mL diluted in PBS overnight at 4°C. The next day, MSD plates were washed 3 times with 300 uL/well of PBS + 0.05% Tween. Plates were then blocked with 150 uL/well of PBS + 5% BSA buffer, shaking at 450 rpm for 1 hour at room temperature. Plates were then washed 3 times with 300 uL/well of PBS + 0.05% Tween. Each lysate sample was added to the MSD plates at 25 uL/well, shaking at 450 rpm for 2 hours at room temperature. Plates were then washed 3 times with 300 uL/well of PBS + 0.05% Tween. A Sulfo-tag purified mouse anti-human BTK antibody (BD, clone 53, 624084) was diluted to 0.5 ug/mL and 25 uL was added to each well. Plates were shaken at 450 rpm for 1 hour at room temperature. Plates were then washed 3 times with 300 uL/well of PBS + 0.05% Tween. MSD Read Buffer T (4x) (MSD, R92TC-1) was diluted to 2X with ddH 2O and 150 uL was added to each well. Plates were immediately read on an MSD Sector 600 Imager. To evaluate the effect of the drug treatments, signal levels from wells containing untreated cells (100% viability) were used to normalize treated samples. A variable slope model was applied to fit a nonlinear regression curve to the data in GraphPad PRISM version 10 software. GI50 and Amax values were extrapolated from the resultant curves.

   Click to Show/Hide
In Vitro Model Diffuse large B-cell lymphoma, Diffuse large B-cell lymphoma activated B-cell type TMD8 cells (wt) CVCL_A442
References
Ref 1 Design, Synthesis, and In Vitro and In Vivo Evaluation of Cereblon Binding Bruton's Tyrosine Kinase (BTK) Degrader CD79b Targeted Antibody-Drug Conjugates